The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases

11 October 2022
Une étude mêlant des expériences de mutagénèse, de diffraction des rayons-X à haute résolution avec des thiosucres et de la modélisation moléculaire vient de mettre en évidence les bases moléculaires à l’origine de la spécificité et de la processivité d’une enzyme de la famille GH3 des glycoside hydrolases. Cliquez sur le titre pour plus d'informations.

Résumé:

« In the barley β- d -glucan glucohydrolase, a glycoside hydrolase family 3 (GH3) enzyme, the Trp286/Trp434 clamp ensures β- d -glucosides binding, which is fundamental for substrate hydrolysis during plant growth and development. We employ mutagenesis, high-resolution X-ray crystallography, and multi-scale molecular modelling methods to examine the binding and conformational behaviour of isomeric β- d -glucosides during substrate-product assisted processive catalysis that operates in GH3 hydrolases. Enzyme kinetics reveals that the W434H mutant retains broad specificity, while W434A behaves as a strict (1,3)-β- d -glucosidase. Investigations of reactant movements on the nanoscale reveal that processivity is sensitive to mutation-specific alterations of the tryptophan clamp. While wild-type and W434H utilise a lateral cavity for glucose displacement and sliding of (1,3)-linked hydrolytic products through the catalytic site without dissociation, consistent with their high hydrolytic rates, W434A does not adopt processive catalysis. Phylogenomic analyses of GH3 hydrolases disclose the evolutionary advantage of the tryptophan clamp that confers broad specificity, high catalytic efficiency, and processivity.  »

 

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